PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1379
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 349aa    MW: 39020.3 Da    PI: 9.2057
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1379genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.33.5e-1723102273
     trihelix   2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                  Wt +e+++Liea++ ++er          rgk  + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++
  Gh_D05G1379  23 WTVNETMVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRIAE 102
                  *************977666662222222224799**************************************99988644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.121587IPR017877Myb-like domain
PfamPF138372.0E-132298No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKLVMADQGV DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK  120
NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP  180
PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY  240
SDSPAKRRKR GTGNGEGSSG GTTSANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL  300
VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALI THKKQSAPK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.25471e-125boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445521.10.0PREDICTED: uncharacterized protein LOC105769437 isoform X1
TrEMBLA0A0D2QGI70.0A0A0D2QGI7_G
STRINGPOPTR_0012s11820.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-59Trihelix family protein